PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022962676.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family B3
Protein Properties Length: 297aa    MW: 33771.7 Da    PI: 9.2631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022962676.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.2e-2121111199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+    +++s+r+++p  f++ + g    + + +l+d+sg+ W v+l  +  ++++++++GW+eFv+++ Lk gDf+vF++dg+s+f   vk
  XP_022962676.1  21 FFKVF--LPNSSSRRMSIPPAFVKYFRGC--IPSEAVLKDQSGQPWHVTL--QELKNSVFFKNGWQEFVDSHCLKYGDFLVFQYDGNSTF--DVK 107
                     89999..667777889*******555444..4558***************..999999****************************9999..9** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_022962676.1 108 IFSK 111
                     9997 PP
2B345.21.7e-142022891299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                     +++ + +pk+ + +h++    + ++++ de+grsW v+   +  s++ + lt+GW  F +a+ L++ D ++F+  l ++  ++el+vk+ r+
  XP_022962676.1 202 SHNAIHIPKRVMVAHNIL--LKPDVVIVDEKGRSWLVTA--KPISRSrFALTTGWPIFFRAHSLRVDDKCTFEfvLGSDnICGELNVKITRS 289
                     567799******999544..3338***************..5555555*************************5544556889999998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MAKSLVELRD PSSRILSSLE FFKVFLPNSS SRRMSIPPAF VKYFRGCIPS EAVLKDQSGQ  60
PWHVTLQELK NSVFFKNGWQ EFVDSHCLKY GDFLVFQYDG NSTFDVKIFS KNGCKKELIS  120
GTSSLIPEVK VKDEPRSEEE YSTSLIRCKR NDSEVRSSDC SGTAPKSRKI STTNLEELSP  180
SKTANHVSME PPTFELLVKH WSHNAIHIPK RVMVAHNILL KPDVVIVDEK GRSWLVTAKP  240
ISRSRFALTT GWPIFFRAHS LRVDDKCTFE FVLGSDNICG ELNVKITRSR EGIQHEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-36B3 family protein