PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963111.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 24798 Da PI: 7.6623

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963111.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	57	110	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_022963111.1 57 KRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110 56899***********************************************95 PP
2	HD-ZIP_I/II	120.7	7.3e-39	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d++ +n++Le+e+++L e+l+e XP_022963111.1 56 KKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMAKLSEQLRE 147 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MAAADDDNTL LMSNLYSPGV FTQILTQQGA AEGNKPTKRR RRRSKAKEAA GAAGLKKRKL 60 STEQVKLLEM NFGDEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL 120 KKAHDSILLQ NSHLESEMAK LSEQLREAKN EIQRLVEGSE KIWSSSPTSS ETMDAMPPPV 180 PSWGELFLGE YEDVFYCMQQ QHGNYSQGME WLNLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	KRRRRR
2	38	59	KRRRRRSKAKEAAGAAGLKKRK
3	39	60	KRRRRRSKAKEAAGAAGLKKRK
4	40	61	KRRRRRSKAKEAAGAAGLKKRK
5	41	62	KRRRRRSKAKEAAGAAGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	1e-51	HD-ZIP family protein