PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963428.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 561aa MW: 60797.6 Da PI: 7.2151

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963428.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	222	266	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_022963428.1 222 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 266 79****************************************985 PP
2	QLQ	56.4	9.2e-20	154	189	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+ +L++Q+l+yKyL++n+PvP++Ll +++k XP_022963428.1 154 PFTQSQWIELEHQALIYKYLSSNVPVPSNLLIPLKK 189 9*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDFGVVGLDS FVDSSDAPSP YPETKLKSLG SAFSKQDRSG FVDDDDWSNS KIPKTDTTLS 60 ASKTMPLHQG FPLLRSNALL STDGRQKEHM LSFSSLKSDT SLQTKDSELI ARNLQTSIYP 120 YHQHKSSPYS RNTGCVSGSY SGSMHGAVAG IRAPFTQSQW IELEHQALIY KYLSSNVPVP 180 SNLLIPLKKS LYPYGLTCSS AGSLPPNTRW GSFHLGFSGN TDPEPGRCRR TDGKKWRCSR 240 DAVADQKYCE RHINRGRHRS RKPVEGQTGH SVPGTTNPTA MVATMTTSLS STVMPSGGAS 300 NNNLPIIQHQ HQLKSLHPGA GAASNPGVDA PVNRIQEPGG LSMMSSTVNL MSSSDKSGAK 360 HEISLGESTQ SEFGLVSTDS LLNPSQRGSY ANPKNFDSFL IFNDQETQDQ DQHPLRQFCE 420 DWPKDQSSRS VMTWPEEFKS DWTQLSMSIP MSNFSSSSSS PTQEKLVQSP LRLSKEEVEP 480 MEINLGVSRN DGEVAQKEMS WGGSMGGPLG EALTNANSCV KGSKVPPSLN LLAEGWDGGQ 540 LGSSPTGVLQ KATFCSLSNS S

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDFGVVGLDS FVDSSDAPSP YPETKLKSLG SAFSKQDRSG FVDDDDWSNS KIPKTDTTLS  60
ASKTMPLHQG FPLLRSNALL STDGRQKEHM LSFSSLKSDT SLQTKDSELI ARNLQTSIYP  120
YHQHKSSPYS RNTGCVSGSY SGSMHGAVAG IRAPFTQSQW IELEHQALIY KYLSSNVPVP  180
SNLLIPLKKS LYPYGLTCSS AGSLPPNTRW GSFHLGFSGN TDPEPGRCRR TDGKKWRCSR  240
DAVADQKYCE RHINRGRHRS RKPVEGQTGH SVPGTTNPTA MVATMTTSLS STVMPSGGAS  300
NNNLPIIQHQ HQLKSLHPGA GAASNPGVDA PVNRIQEPGG LSMMSSTVNL MSSSDKSGAK  360
HEISLGESTQ SEFGLVSTDS LLNPSQRGSY ANPKNFDSFL IFNDQETQDQ DQHPLRQFCE  420
DWPKDQSSRS VMTWPEEFKS DWTQLSMSIP MSNFSSSSSS PTQEKLVQSP LRLSKEEVEP  480
MEINLGVSRN DGEVAQKEMS WGGSMGGPLG EALTNANSCV KGSKVPPSLN LLAEGWDGGQ  540
LGSSPTGVLQ KATFCSLSNS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-105	GRF family protein