PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022963500.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24412 Da    PI: 9.5504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022963500.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1961115256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q + Lee F+ n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_022963500.1  61 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 115
                     788899***********************************************98 PP
2HD-ZIP_I/II116.51.5e-3761149190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rlsk+q++lLEesF+ +++L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++e eeLr +
  XP_022963500.1  61 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELR-A 149
                     69*************************************************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MAIIPINSSN LDLSISMPGS SPSRPPFVRE FDMNRLPEVG DGEEEWAEEE EESYINDCKP  60
RKKLRLSKDQ SRLLEESFRL NHTLNPKQKE ALAMELKLKP RQVEVWFQNR RARSKLKQTE  120
RECEYLKRWF GSLTEQNRRL RQELEELRAM KVAPTAVVSA HGRQPPLPIS AITMCPRCER  180
MSASTITYGK GASSASTLPP EAFLSALKLR QPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965KPRKKLR
2110118RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-60HD-ZIP family protein