PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963563.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 546aa MW: 60122.8 Da PI: 5.5841

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963563.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	401	447	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_022963563.1 401 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 447 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MYSSEKNPIP CFSSVFWTKL RPPSITISDS ALISEVVEVG FLRSGDLIWK MGEKFWANEE 60 NRVLVESVLG SEACEFLISL ASSNIMPPEA FQFSSVNQGL TQLLDGSNWN YAIFWRVVTL 120 KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG SDEDGFGARK 180 EEALDIDMLY RTSMYFKFTC DSGSSLGASY NAGKTIWASD SSSCMRNYES RGFLAKVAGL 240 QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF GHELSLGGAK 300 TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM HPAQEIVGGF 360 TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL 420 RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQQI VNGRVKNAEI DFQARDEDAV 480 VRVSCPLDSH PVSRVIKTFR EHQIEAHESN VTTSTDNDKV IHSFSIRTEG GAAEQLKEKL 540 VAALSN

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MYSSEKNPIP CFSSVFWTKL RPPSITISDS ALISEVVEVG FLRSGDLIWK MGEKFWANEE  60
NRVLVESVLG SEACEFLISL ASSNIMPPEA FQFSSVNQGL TQLLDGSNWN YAIFWRVVTL  120
KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG SDEDGFGARK  180
EEALDIDMLY RTSMYFKFTC DSGSSLGASY NAGKTIWASD SSSCMRNYES RGFLAKVAGL  240
QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF GHELSLGGAK  300
TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM HPAQEIVGGF  360
TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  420
RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQQI VNGRVKNAEI DFQARDEDAV  480
VRVSCPLDSH PVSRVIKTFR EHQIEAHESN VTTSTDNDKV IHSFSIRTEG GAAEQLKEKL  540
VAALSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	391	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-153	bHLH family protein