PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963568.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 617aa MW: 68228.6 Da PI: 4.7893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963568.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	451	496	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_022963568.1 451 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 496 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MTDYRLPQAM NLWADENASM MDVFTSTDLS SLWVTPPLPQ PQPQPQPQPL YSSVSTAIEP 60 SKPVGQEPPP PPSLAVFNQE TLMQRLQVLI EGAQESWTYA IFWQSSYYSG GNLLGWGDGY 120 YKGEEDKEKA KSSTSKTEQE RRKTVLRELN SLISGSPASD DDAVDEVVTD TEWFFLVSMT 180 QSFVSGVGLP GQAFLDSNPI WISGSDRLAS SFCERARQGQ IFGLQTMVCI PLVNGVVELG 240 SSDLIFLNSD LMNRVRVLFN FNNLEAETWP ISGENDPSLW ITEPLSNTIE IKDAIETPSS 300 SVPPPPQKSN RQPQPVQKQS FLTPKELNFS EFGFENGSLK AESGEILNFS GTKKNSHPKT 360 DNILPSGNPG GGDENKKKTS SNEEGMLSFT SGVILPSSGT AKSTGCIVDS DHSDLEASVI 420 REVESNRAVE PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM 480 DKASLLGDAI SYINELKGKL QTAESDKEEL QKQLDSVKKF ISSSDQDVKA SNYGIETDID 540 VKIISWDAMI RIQSSKKNHP AARLMAALEE LDLDISHASI SVVNDLMIQQ ATVKMGSRLY 600 TQEQLRIALS SKMAAAR

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MTDYRLPQAM NLWADENASM MDVFTSTDLS SLWVTPPLPQ PQPQPQPQPL YSSVSTAIEP  60
SKPVGQEPPP PPSLAVFNQE TLMQRLQVLI EGAQESWTYA IFWQSSYYSG GNLLGWGDGY  120
YKGEEDKEKA KSSTSKTEQE RRKTVLRELN SLISGSPASD DDAVDEVVTD TEWFFLVSMT  180
QSFVSGVGLP GQAFLDSNPI WISGSDRLAS SFCERARQGQ IFGLQTMVCI PLVNGVVELG  240
SSDLIFLNSD LMNRVRVLFN FNNLEAETWP ISGENDPSLW ITEPLSNTIE IKDAIETPSS  300
SVPPPPQKSN RQPQPVQKQS FLTPKELNFS EFGFENGSLK AESGEILNFS GTKKNSHPKT  360
DNILPSGNPG GGDENKKKTS SNEEGMLSFT SGVILPSSGT AKSTGCIVDS DHSDLEASVI  420
REVESNRAVE PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM  480
DKASLLGDAI SYINELKGKL QTAESDKEEL QKQLDSVKKF ISSSDQDVKA SNYGIETDID  540
VKIISWDAMI RIQSSKKNHP AARLMAALEE LDLDISHASI SVVNDLMIQQ ATVKMGSRLY  600
TQEQLRIALS SKMAAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	441	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-179	bHLH family protein