PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022963633.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 222aa    MW: 23423.4 Da    PI: 7.7548
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022963633.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.23.1e-39281291101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r +a+ +++yeA+ar+ dPvyG+v++i++lqqq+++l+a+l
  XP_022963633.1  28 PCGACKFLRRKCVAECIFAPYFSSEQgAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQL 122
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_022963633.1 123 MQAKAQL 129
                     9999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MASSSSSSST ANSSVSGGGG GGGGGGSPCG ACKFLRRKCV AECIFAPYFS SEQGAARFAA  60
VHKVFGASNV SKLLHHVPAH DRCEAVVTIA YEAQARILDP VYGCVAHIFA LQQQVACLQA  120
QLMQAKAQLA QTLMESGGNM ELQWTGSFNN NLSNGIPSNY ETQIMNPAVS PQSSVESAAN  180
NDAALMFMNH YQESQTLGRR RSASCHGDLG ELQALALRMM RN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-55LBD family protein