PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963680.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 509aa MW: 55930.8 Da PI: 4.9558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963680.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.1	1.2e-16	315	361	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K++Ka++L +A+eY+ksLq XP_022963680.1 315 VHNLSERRRRDRINEKMKALQELIPRC-----NKVDKASMLDEAIEYLKSLQ 361 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MNHCVPDFER DEDFSLSNSS VQSRFKTSSM SDGEVMELLW QNGQVIMQNQ NQKFRTKSPP 60 STTAEQITSG DNQPFQQEEP PQLFMQEDEM ISWLHYPLVD DSTLENSFCN ELLYHSDPQS 120 IEQNDGVSSQ IRTSRGVEFQ PLTTTATSTM AARPPIPPMR RTEPETEVNN FGLFSRFTPT 180 VESPPSNSKS IVRESPVVGS TSSNTTVLTL ESTASELQRT ATADASIGDL ACAVMSSGGV 240 AATSTGNGVG LMKMIGGETE SIQRTTSLED RKRKGKEMDD SDYQCYSPDV GFEATDAKKQ 300 ARGSTSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKVDKASML DEAIEYLKSL 360 QLQVQMMSMG CGMVPMMFPG VQQFMPPMGM GLGMGMGMGM ETGVNRPMMP YPNLLAGPMF 420 PRQSGAAQLG PTFSFPAFNM AHQNSRIQET NQSDHFHSLP GMKNINPPEA SSSLHGYQQF 480 LGSQQMPAPA AVSQPSRQAE IGGSMECPG

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MNHCVPDFER DEDFSLSNSS VQSRFKTSSM SDGEVMELLW QNGQVIMQNQ NQKFRTKSPP  60
STTAEQITSG DNQPFQQEEP PQLFMQEDEM ISWLHYPLVD DSTLENSFCN ELLYHSDPQS  120
IEQNDGVSSQ IRTSRGVEFQ PLTTTATSTM AARPPIPPMR RTEPETEVNN FGLFSRFTPT  180
VESPPSNSKS IVRESPVVGS TSSNTTVLTL ESTASELQRT ATADASIGDL ACAVMSSGGV  240
AATSTGNGVG LMKMIGGETE SIQRTTSLED RKRKGKEMDD SDYQCYSPDV GFEATDAKKQ  300
ARGSTSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKVDKASML DEAIEYLKSL  360
QLQVQMMSMG CGMVPMMFPG VQQFMPPMGM GLGMGMGMGM ETGVNRPMMP YPNLLAGPMF  420
PRQSGAAQLG PTFSFPAFNM AHQNSRIQET NQSDHFHSLP GMKNINPPEA SSSLHGYQQF  480
LGSQQMPAPA AVSQPSRQAE IGGSMECPG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	325	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	1e-65	bHLH family protein