PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963852.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

NF-YC

Protein Properties

Length: 248aa MW: 27717.3 Da PI: 6.6798

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963852.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.2	3.4e-55	69	172	2	102
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv XP_022963852.1 69 HQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 163 689**988889****************************************************************************** PP NF-YC 94 divprdelk 102 di+prdelk XP_022963852.1 164 DIIPRDELK 172 ****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MDQSERSQHQ QQSQQPAGGV GGAGGAGTYS NPYQTAPLVA SGTPAITVPP TQLAFQQAQH 60 FHHHQQQQHQ MFWANQMQEI EQTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFAKA 120 CEMFILELTL RSWIHTEENK RRTLQKNDIA AAISRTDVFD FLVDIIPRDE LKEEGLGITK 180 ASIPVVGSPA DIPYYYVPSQ HPVGATGMIM GKQLDQANVY GATAQQPRPP MPFMPWPHTQ 240 PQQQQQQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	2e-82	NF-YC family protein