PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022963997.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 721aa    MW: 80848.8 Da    PI: 6.6512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022963997.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1981136156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++ ++t+eq++e+e++F+++++p++++r++L+++lgL  +q+k+WFqNrR++ k
  XP_022963997.1  81 KKRKNRHTSEQIREMEKVFKESPHPDEKQRQKLSENLGLHSKQIKFWFQNRRTQIK 136
                     567788**********************************************9876 PP
2START192.91.5e-602514711205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     e+a +a +e+vk+a+++ep+W +s     e +n+de++++f+ ++     ++ea+r+sgvv+ +l++lv++++d+  qW+e+++    ka+t+ev
  XP_022963997.1 251 EIAKRAIEEVVKMADSGEPLWIRSFetgrELLNYDEYMKQFAGEHEqpkGEIEASRESGVVFVDLHRLVQSFMDVV-QWKEMFPsiisKASTIEV 344
                     57899*******************9999999**********877778888**************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvd 171
                     +++g      ga+qlm+aelq+l+p+ p R+++f+R++++l+ ++wv++dvS+++  +    s+s+   +++pSg++ie++sngh+kv+++eh++
  XP_022963997.1 345 VCNGdgstrnGAVQLMFAELQMLTPVFPpREVYFIRTCKRLSPEKWVVADVSINNVGDSIDsSPSFC--RKRPSGCIIEDTSNGHCKVIVLEHWE 437
                     ********************************************************99875445554..6************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++   + ++r +v+sgl++ga++w+at+q +ce
  XP_022963997.1 438 CQKTKLRTMYRTIVNSGLIFGARHWMATMQTHCE 471
                     *********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    
MAVVMSDNRP SRRVMNVPSS PALSLTLAGV FQNAVDMGAD APVRREDSCS DNSEPAGSRS  60
AEDLGVEPDD EDEDKGLGNR KKRKNRHTSE QIREMEKVFK ESPHPDEKQR QKLSENLGLH  120
SKQIKFWFQN RRTQIKVSLE RQEMEKLREE NQALKEMINK SSCPKCCSSA NSIAISMDSM  180
FTSSDQNQQQ LVTEIVRLKA EVEGLRTALE QYAPAGTSRS RSGENEDAIE GRRNLEKSKR  240
IFGLEKARVM EIAKRAIEEV VKMADSGEPL WIRSFETGRE LLNYDEYMKQ FAGEHEQPKG  300
EIEASRESGV VFVDLHRLVQ SFMDVVQWKE MFPSIISKAS TIEVVCNGDG STRNGAVQLM  360
FAELQMLTPV FPPREVYFIR TCKRLSPEKW VVADVSINNV GDSIDSSPSF CRKRPSGCII  420
EDTSNGHCKV IVLEHWECQK TKLRTMYRTI VNSGLIFGAR HWMATMQTHC EWQVFYMATN  480
VPMKDSTGIT TLGGRKSVLR LAQRMTSSIY QAMGASSSHT WTKVQSKMGE NIRVASRKNL  540
NDPREPLGLI LCAVASVWLP ISPKLLFEFL INGSRRIEWD VMLSGPVETL AVFAKGQNRG  600
NAVTIQAIKS DESNKWIIQD SLTNDYESTV IYAQIDITSM QSVMAGCDPS TITTLPMGFS  660
ILPDGHPPRA SVISKSKEER VTEGGSLLTI ATQTSQSAEY VNDFVSHTLE NIKASLQVED  720
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein