PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964190.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 580aa MW: 64235.1 Da PI: 5.7476

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964190.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	463	511	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_022964190.1 463 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 511 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MQFTSGLVIS LKILEYQWKK VDGDGRFVPA TDDEVMEVED LLEDDKSEKV EDAGQIVECI 60 PTEGTLFGKP HVEISNGLPQ SEGDAGYTAR LEYIEEVLQK VKQEERLRLA CGSLNYPSAY 120 VDGDRKGSDQ HGSLVTDEKF QSQISLQEIS HCSPSLNENH ENEHGSLGNF LKHPDKSVES 180 ESSDAICTTS KPEFSMLKGD ICLDNLSIRE LHECFKATFG RDTTVKDKSW LKRRIAMGLT 240 NSCDIPASSF IIKEGKFVEE SSQNVVGVST IPTAEALNIE CTGSPTTYCL ETKDHHHVEE 300 IELDHGIDDQ HEERAAVKRI RKPTRRYIEE LSEVESREFV PKVISLNKSS VSDSVSANSI 360 ERPSKKVCSD RGRTVITRLD SLGGSGVQVP CVSRVRRSRP RKNIVALVFT LPDKDQNPSV 420 KDTNEVEEKN LEEKPTDSGN ASDDNAIIVP TPKGGSRRKH HRAWTLVEVI KLVEGVSICG 480 AGRWSEIKKL SFSSYSYRTS VDLKDKWRNL LKASFAQTPV GEGVSSRKHV SVSIPEQILL 540 QVRELAEMHA QIPPSNHGQG KLGGVSSGSN MHEISPAVCL

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MQFTSGLVIS LKILEYQWKK VDGDGRFVPA TDDEVMEVED LLEDDKSEKV EDAGQIVECI  60
PTEGTLFGKP HVEISNGLPQ SEGDAGYTAR LEYIEEVLQK VKQEERLRLA CGSLNYPSAY  120
VDGDRKGSDQ HGSLVTDEKF QSQISLQEIS HCSPSLNENH ENEHGSLGNF LKHPDKSVES  180
ESSDAICTTS KPEFSMLKGD ICLDNLSIRE LHECFKATFG RDTTVKDKSW LKRRIAMGLT  240
NSCDIPASSF IIKEGKFVEE SSQNVVGVST IPTAEALNIE CTGSPTTYCL ETKDHHHVEE  300
IELDHGIDDQ HEERAAVKRI RKPTRRYIEE LSEVESREFV PKVISLNKSS VSDSVSANSI  360
ERPSKKVCSD RGRTVITRLD SLGGSGVQVP CVSRVRRSRP RKNIVALVFT LPDKDQNPSV  420
KDTNEVEEKN LEEKPTDSGN ASDDNAIIVP TPKGGSRRKH HRAWTLVEVI KLVEGVSICG  480
AGRWSEIKKL SFSSYSYRTS VDLKDKWRNL LKASFAQTPV GEGVSSRKHV SVSIPEQILL  540
QVRELAEMHA QIPPSNHGQG KLGGVSSGSN MHEISPAVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	396	402	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-95	MYB_related family protein