PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964191.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 562aa MW: 62099.6 Da PI: 5.6371

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964191.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	445	493	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_022964191.1 445 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 493 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MKVDGDGRFV PATDDEVMEV EDLLEDDKSE KVEDAGQIVE CIPTEGTLFG KPHVEISNGL 60 PQSEGDAGYT ARLEYIEEVL QKVKQEERLR LACGSLNYPS AYVDGDRKGS DQHGSLVTDE 120 KFQSQISLQE ISHCSPSLNE NHENEHGSLG NFLKHPDKSV ESESSDAICT TSKPEFSMLK 180 GDICLDNLSI RELHECFKAT FGRDTTVKDK SWLKRRIAMG LTNSCDIPAS SFIIKEGKFV 240 EESSQNVVGV STIPTAEALN IECTGSPTTY CLETKDHHHV EEIELDHGID DQHEERAAVK 300 RIRKPTRRYI EELSEVESRE FVPKVISLNK SSVSDSVSAN SIERPSKKVC SDRGRTVITR 360 LDSLGGSGVQ VPCVSRVRRS RPRKNIVALV FTLPDKDQNP SVKDTNEVEE KNLEEKPTDS 420 GNASDDNAII VPTPKGGSRR KHHRAWTLVE VIKLVEGVSI CGAGRWSEIK KLSFSSYSYR 480 TSVDLKDKWR NLLKASFAQT PVGEGVSSRK HVSVSIPEQI LLQVRELAEM HAQIPPSNHG 540 QGKLGGVSSG SNMHEISPAV CL

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MKVDGDGRFV PATDDEVMEV EDLLEDDKSE KVEDAGQIVE CIPTEGTLFG KPHVEISNGL  60
PQSEGDAGYT ARLEYIEEVL QKVKQEERLR LACGSLNYPS AYVDGDRKGS DQHGSLVTDE  120
KFQSQISLQE ISHCSPSLNE NHENEHGSLG NFLKHPDKSV ESESSDAICT TSKPEFSMLK  180
GDICLDNLSI RELHECFKAT FGRDTTVKDK SWLKRRIAMG LTNSCDIPAS SFIIKEGKFV  240
EESSQNVVGV STIPTAEALN IECTGSPTTY CLETKDHHHV EEIELDHGID DQHEERAAVK  300
RIRKPTRRYI EELSEVESRE FVPKVISLNK SSVSDSVSAN SIERPSKKVC SDRGRTVITR  360
LDSLGGSGVQ VPCVSRVRRS RPRKNIVALV FTLPDKDQNP SVKDTNEVEE KNLEEKPTDS  420
GNASDDNAII VPTPKGGSRR KHHRAWTLVE VIKLVEGVSI CGAGRWSEIK KLSFSSYSYR  480
TSVDLKDKWR NLLKASFAQT PVGEGVSSRK HVSVSIPEQI LLQVRELAEM HAQIPPSNHG  540
QGKLGGVSSG SNMHEISPAV CL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	384	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	3e-95	MYB_related family protein