PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964192.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 545aa MW: 60266.6 Da PI: 5.9534

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964192.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	428	476	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_022964192.1 428 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 476 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEVEDLLEDD KSEKVEDAGQ IVECIPTEGT LFGKPHVEIS NGLPQSEGDA GYTARLEYIE 60 EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGSLV TDEKFQSQIS LQEISHCSPS 120 LNENHENEHG SLGNFLKHPD KSVESESSDA ICTTSKPEFS MLKGDICLDN LSIRELHECF 180 KATFGRDTTV KDKSWLKRRI AMGLTNSCDI PASSFIIKEG KFVEESSQNV VGVSTIPTAE 240 ALNIECTGSP TTYCLETKDH HHVEEIELDH GIDDQHEERA AVKRIRKPTR RYIEELSEVE 300 SREFVPKVIS LNKSSVSDSV SANSIERPSK KVCSDRGRTV ITRLDSLGGS GVQVPCVSRV 360 RRSRPRKNIV ALVFTLPDKD QNPSVKDTNE VEEKNLEEKP TDSGNASDDN AIIVPTPKGG 420 SRRKHHRAWT LVEVIKLVEG VSICGAGRWS EIKKLSFSSY SYRTSVDLKD KWRNLLKASF 480 AQTPVGEGVS SRKHVSVSIP EQILLQVREL AEMHAQIPPS NHGQGKLGGV SSGSNMHEIS 540 PAVCL

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEVEDLLEDD KSEKVEDAGQ IVECIPTEGT LFGKPHVEIS NGLPQSEGDA GYTARLEYIE  60
EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGSLV TDEKFQSQIS LQEISHCSPS  120
LNENHENEHG SLGNFLKHPD KSVESESSDA ICTTSKPEFS MLKGDICLDN LSIRELHECF  180
KATFGRDTTV KDKSWLKRRI AMGLTNSCDI PASSFIIKEG KFVEESSQNV VGVSTIPTAE  240
ALNIECTGSP TTYCLETKDH HHVEEIELDH GIDDQHEERA AVKRIRKPTR RYIEELSEVE  300
SREFVPKVIS LNKSSVSDSV SANSIERPSK KVCSDRGRTV ITRLDSLGGS GVQVPCVSRV  360
RRSRPRKNIV ALVFTLPDKD QNPSVKDTNE VEEKNLEEKP TDSGNASDDN AIIVPTPKGG  420
SRRKHHRAWT LVEVIKLVEG VSICGAGRWS EIKKLSFSSY SYRTSVDLKD KWRNLLKASF  480
AQTPVGEGVS SRKHVSVSIP EQILLQVREL AEMHAQIPPS NHGQGKLGGV SSGSNMHEIS  540
PAVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	367	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-95	MYB_related family protein