PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964403.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 469aa MW: 50364.2 Da PI: 8.4189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964403.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.3e-15	297	342	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_022964403.1 297 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 342 9**********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MSRCVPNWDL SASAAPPPFH ASSAPHDVVP TFEYEVAELT WENGQLAMHG LGLPRVTGKI 60 QYGGGGGGGG GGGGGSKNTW DNKPARASGT LESLVNQGTC HGEIIGFNGR CGDDGTDTVP 120 WFSDHHRQTP QTPAAMDAMV PCEAGKAPAE SSDMRVATRV ENEKGRMIHG KGGRVMARMV 180 HLSTEWSGCR NQMKVSGNAA KFGGESGKKV TSDTRDRDFS VVRGGGGGLT VTTATSQESM 240 DNTRSGKICI KTTTAAAAID DRDSVCHSTH QVEEEDRHKE NPKSSVSTKR SRAAAIHNQS 300 ERKRRDKINQ RMKTLQKLVP NSNKTDKASM LDEVIEYLKQ LQAQVQMMSR MNMPMMVPMA 360 LHQQLPLASL MNMPMMGMAG MGMGLGMDHL NMIANRPALA AGMSPLLHPT AFMATAAWDG 420 GTADHIQPLP TDPLSTFLAC QSQPMAMEAY NRIAMMFQQH PSMAGGSKN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MSRCVPNWDL SASAAPPPFH ASSAPHDVVP TFEYEVAELT WENGQLAMHG LGLPRVTGKI  60
QYGGGGGGGG GGGGGSKNTW DNKPARASGT LESLVNQGTC HGEIIGFNGR CGDDGTDTVP  120
WFSDHHRQTP QTPAAMDAMV PCEAGKAPAE SSDMRVATRV ENEKGRMIHG KGGRVMARMV  180
HLSTEWSGCR NQMKVSGNAA KFGGESGKKV TSDTRDRDFS VVRGGGGGLT VTTATSQESM  240
DNTRSGKICI KTTTAAAAID DRDSVCHSTH QVEEEDRHKE NPKSSVSTKR SRAAAIHNQS  300
ERKRRDKINQ RMKTLQKLVP NSNKTDKASM LDEVIEYLKQ LQAQVQMMSR MNMPMMVPMA  360
LHQQLPLASL MNMPMMGMAG MGMGLGMDHL NMIANRPALA AGMSPLLHPT AFMATAAWDG  420
GTADHIQPLP TDPLSTFLAC QSQPMAMEAY NRIAMMFQQH PSMAGGSKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	ERKRRD
2	302	307	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-75	bHLH family protein