PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964748.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 424aa MW: 47919.7 Da PI: 5.687

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964748.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.8e-18	122	168	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l XP_022964748.1 122 KGQWTEEEDRKLIRLVKQYGVRKWAQIAEKLE-GRAGKQCRERWHNHL 168 799***************************.***********97 PP
2	Myb_DNA-binding	48.7	1.8e-15	174	216	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+ XP_022964748.1 174 KESWSEEEEMILVETHARVGNR-WAEIAKSIP-GRTENAIKNHWN 216 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MQSNAPPSGP PLAAIDRFLY SHNVNGNCFE NGLMGGGLSP ESCGGEWFEM DGRLRVEEAL 60 RLQIELELEE LEELEELEEE DSEMYGWGRR NEGKAMITPN HERKICSKLK KLKKPSSAIL 120 IKGQWTEEED RKLIRLVKQY GVRKWAQIAE KLEGRAGKQC RERWHNHLRP DIKKESWSEE 180 EEMILVETHA RVGNRWAEIA KSIPGRTENA IKNHWNATKR RQNSRRKNKR PNSQNGKPHS 240 SILQDYIKTK YNPTSVPATS TVMSAVSNDP SSHFNHFFSE SSDSTSNLSS AIISSPMYDD 300 ELLFMQNFFS NSGGLFPSVD DGASMVVRNQ SVAEFGSVDS EPKAEKGKVI NGSNMVKSSH 360 LYSDMYMSYL LNGTMNSGSS DGEILKTVEM AELQVAAGEG QWETSEEGKR EMDLIEMMSF 420 HCYS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MQSNAPPSGP PLAAIDRFLY SHNVNGNCFE NGLMGGGLSP ESCGGEWFEM DGRLRVEEAL  60
RLQIELELEE LEELEELEEE DSEMYGWGRR NEGKAMITPN HERKICSKLK KLKKPSSAIL  120
IKGQWTEEED RKLIRLVKQY GVRKWAQIAE KLEGRAGKQC RERWHNHLRP DIKKESWSEE  180
EEMILVETHA RVGNRWAEIA KSIPGRTENA IKNHWNATKR RQNSRRKNKR PNSQNGKPHS  240
SILQDYIKTK YNPTSVPATS TVMSAVSNDP SSHFNHFFSE SSDSTSNLSS AIISSPMYDD  300
ELLFMQNFFS NSGGLFPSVD DGASMVVRNQ SVAEFGSVDS EPKAEKGKVI NGSNMVKSSH  360
LYSDMYMSYL LNGTMNSGSS DGEILKTVEM AELQVAAGEG QWETSEEGKR EMDLIEMMSF  420
HCYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	230	KRRQNSRRKNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	9e-63	MYB family protein