PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022965417.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 384aa MW: 43300.4 Da PI: 7.1616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022965417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	199	243	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++ErrRR+++N +f+ Lr+llP+ +K +K+++L + eY+ +L XP_022965417.1 199 HMIAERRRREKLNGSFQALRSLLPPG-----TKKDKSSVLATTREYLTKL 243 7899******************97.....8************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDTVFSLDEA PRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE DDANQPSSSL 60 GSFERRLFDE YKPLIFKVEN NVIIMNSLVP GHAFNNNIFF LELHQSLLHA HSSSQIQSHF 120 YAAAGIKSVV FMGCSNGEIE LGFSEVNMVE KMRATSPFSS MAVLNNPPPP TSSSFETDYK 180 PSLSMNFLRR RPGSAQLLHM IAERRRREKL NGSFQALRSL LPPGTKKDKS SVLATTREYL 240 TKLREQVSEL SHKNQRLLEA QSQGEETANS LLYERFTVRV SHAPPGFTPS INGMEIIDLE 300 ITVRGGGSLM ADIVIRVLEF LKNVVNVGVI LSFHGIEQIS PSSLISRLRF RFSLQDGEWD 360 ESGFLEAVRR IVSDLATTYN EKQP

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDTVFSLDEA PRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE DDANQPSSSL  60
GSFERRLFDE YKPLIFKVEN NVIIMNSLVP GHAFNNNIFF LELHQSLLHA HSSSQIQSHF  120
YAAAGIKSVV FMGCSNGEIE LGFSEVNMVE KMRATSPFSS MAVLNNPPPP TSSSFETDYK  180
PSLSMNFLRR RPGSAQLLHM IAERRRREKL NGSFQALRSL LPPGTKKDKS SVLATTREYL  240
TKLREQVSEL SHKNQRLLEA QSQGEETANS LLYERFTVRV SHAPPGFTPS INGMEIIDLE  300
ITVRGGGSLM ADIVIRVLEF LKNVVNVGVI LSFHGIEQIS PSSLISRLRF RFSLQDGEWD  360
ESGFLEAVRR IVSDLATTYN EKQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	207	RRRPGSAQLLHMIAERRRR
2	203	208	ERRRRE
3	204	209	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-41	bHLH family protein