PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022967284.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 351aa MW: 38305.1 Da PI: 7.5182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022967284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022967284.1 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	18.7	3.2e-06	163	188	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022967284.1 163 YKGRHCKKFYTEEGCPYGDSCTFLHD 188 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022967284.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS 60 GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PHNWQQEIVA AHEEEKVFSE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG 180 DSCTFLHDEQ SKNRESVAIS LGPGGYSGGG GGGGGGGGGG SGNGSNSKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDLKQGVLPK APGDTLVASV 300 PSVPHSDVYH IVVPSQRSTI VIQRSGQRPH QKWKGPDKIS RIYGDWIDDI E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS  60
GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PHNWQQEIVA AHEEEKVFSE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG  180
DSCTFLHDEQ SKNRESVAIS LGPGGYSGGG GGGGGGGGGG SGNGSNSKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDLKQGVLPK APGDTLVASV  300
PSVPHSDVYH IVVPSQRSTI VIQRSGQRPH QKWKGPDKIS RIYGDWIDDI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-127	C3H family protein