PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022967285.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 350aa MW: 38177 Da PI: 7.5182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022967285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022967285.1 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	18.7	3.2e-06	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022967285.1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	231	256	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022967285.1 231 WKTRICNKWELTGYCPFGSKCHFAHG 256 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS 60 GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD 180 SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGGS GNGSNSKPSN WKTRICNKWE 240 LTGYCPFGSK CHFAHGAAEL HRYGGGLMET ETRDSSSAPP DLKQGVLPKA PGDTLVASVP 300 SVPHSDVYHI VVPSQRSTIV IQRSGQRPHQ KWKGPDKISR IYGDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS  60
GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGGS GNGSNSKPSN WKTRICNKWE  240
LTGYCPFGSK CHFAHGAAEL HRYGGGLMET ETRDSSSAPP DLKQGVLPKA PGDTLVASVP  300
SVPHSDVYHI VVPSQRSTIV IQRSGQRPHQ KWKGPDKISR IYGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-129	C3H family protein