PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022967414.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 226aa    MW: 23715.7 Da    PI: 7.7851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022967414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.2e-39321331101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r +a+ +++yeA+ar+ dPvyG+v++i++lqqq++ l+a+l
  XP_022967414.1  32 PCGACKFLRRKCVAECIFAPYFSSEQgAARFAAVHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQL 126
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_022967414.1 127 MQAKAQL 133
                     9999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MASSSSSSST ANSSVSGGGG GGGGGGGGGG SPCGACKFLR RKCVAECIFA PYFSSEQGAA  60
RFAAVHKVFG ASNVSKLLLH VPVHDRCEAV VTIAYEAQAR ILDPVYGCVA HIFALQQQVA  120
YLQAQLMQAK AQLAQTLMDS GGNMELQWTG SFNNNLSNGI PSNYETQIMN PAVSPQSSVE  180
SAANNDAALM FMNHYQESQT LARRRSASCH GDLGELQALA LRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-60LBD family protein