PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022968236.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 336aa    MW: 37171.7 Da    PI: 9.7382
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022968236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.3e-134896155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_022968236.1 48 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 96
                    689***9788.8*********3.....5**********99*************98 PP
2B393.21.9e-29175275195
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+ tpsdv+k++rlv+pk++ae++        g  ++++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F  +  
  XP_022968236.1 175 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgsaG--SAKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTG 267
                     89***************************999633..457789***********************************************95444 PP

                     SEE..EEE CS
              B3  88 sefelvvk 95 
                     ++++l++ 
  XP_022968236.1 268 EDKQLYIE 275
                     77767665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDQPTTSIKS PPLDTSLGGA TSIVLDSADS STAVGCGVEA ESRKLPSSRF KGVVPQPNGR  60
WGAQIYEKHQ RVWLGTFNEE DEAARAYDVA AQRFRGRDAV TNFKPLSHGQ VDDVVSAFLN  120
SHSKAEIVDM LRKHTYLDEL HQSKRNADLL SSDRKRNGSL SGSDNESDSA RELLFEKAVT  180
PSDVGKLNRL VIPKQHAEKN FPLQTGSAGS AKGLLLNFED GVGKVWRFRY SYWNSSQSYV  240
LTKGWSRFVK EKNLTAGDVV SFLKSTGEDK QLYIEWKASK STPSTGSNTN PVQTVRLFGV  300
DIMKVTPSSG CSEKRRREME FLSSECNKKQ RIVGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-138RAV family protein