PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022968838.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 409aa MW: 45623.1 Da PI: 7.6085

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022968838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.1e-10	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W+++Ede+l+++++++G g+W+++++ g XP_022968838.1 14 KGLWSPDEDEKLLNYITKHGHGCWSSVPKLAG 45 678*************************9987 PP
2	Myb_DNA-binding	45.6	1.6e-14	105	148	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_022968838.1 105 RGPFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 148 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGSHQYH PFSFSIHTNL 60 SLSLSLSLSL SLTSPLHSSF LLGLQRCGKS CRLRWINYLR PDLKRGPFSQ QEEDLIIELH 120 AVLGNRWSQI AAQLPGRTDN EIKNLWNSCI KKKLRQKGID PNTHKPVCVS ADVDNESENN 180 KVPATPTSHR SNDNSSDEAT NKSTETTPLP IIANPHNSNS QIYPQTPQDF FRFQTSTTNA 240 PSEMVDYLSF HHLNYAPSRI PNPNPTSLCF NLPPPPIPTK PQVPTWEGTT FTGGVGGNNH 300 FYDAGNFSWG GLPDCAKSEK LNPTAIPEDI KWSEFVGNPY MVMGNAAAAV QNQEFQFQTE 360 PMYVENISRG TAAETGFITE AGWQRQQASS DAVYNKHLHT LTVSFGNTL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGSHQYH PFSFSIHTNL  60
SLSLSLSLSL SLTSPLHSSF LLGLQRCGKS CRLRWINYLR PDLKRGPFSQ QEEDLIIELH  120
AVLGNRWSQI AAQLPGRTDN EIKNLWNSCI KKKLRQKGID PNTHKPVCVS ADVDNESENN  180
KVPATPTSHR SNDNSSDEAT NKSTETTPLP IIANPHNSNS QIYPQTPQDF FRFQTSTTNA  240
PSEMVDYLSF HHLNYAPSRI PNPNPTSLCF NLPPPPIPTK PQVPTWEGTT FTGGVGGNNH  300
FYDAGNFSWG GLPDCAKSEK LNPTAIPEDI KWSEFVGNPY MVMGNAAAAV QNQEFQFQTE  360
PMYVENISRG TAAETGFITE AGWQRQQASS DAVYNKHLHT LTVSFGNTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	4e-83	MYB family protein