PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022973421.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Whirly
Protein Properties Length: 239aa    MW: 26857.8 Da    PI: 10.2078
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022973421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly178.41.5e-55631982137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+ka +++ + +ptf++l+sg+l+++r+G++ll++ +a++erkydW kkq f+ls+tev++l++l++++sceffhdp++ +s +G+vrk+l +
  XP_022973421.1  63 VYKGKAGVSMFPCLPTFTKLKSGSLVVDRRGSVLLTFFPAIGERKYDWTKKQYFSLSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTI 157
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG G+f++l+v n+ + ++e +svP + +ef+v++++
  XP_022973421.1 158 KAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTA 198
                     ******************9********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MLKLQRWLSR NQLFEQVVCK KAVHVDHAFG SHPFSSGVGI PRQNFTHTVP KNENDRVYAA  60
YNVYKGKAGV SMFPCLPTFT KLKSGSLVVD RRGSVLLTFF PAIGERKYDW TKKQYFSLSP  120
TEVGTLISLG PRDSCEFFHD PGMLSSTAGQ VRKSLTIKAH ADGNGYFISL NVVNNTQSTK  180
EFLSVPFTAG EFSVMKTACS FALPHILGWD RLTKPSLRME KGFQPNKVNR EGLSLEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-77Whirly family protein