PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022973935.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 322aa    MW: 36473.2 Da    PI: 9.3918
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022973935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-104491154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ +++
  XP_022973935.1 44 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIRIR 91
                    799***6.666899****999......44**********************9987 PP
2B386.72e-27166267188
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+ltpsdv+k++rlv+pkk+a ++               +  ++++l++ d++ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F
  XP_022973935.1 166 FQKELTPSDVGKLNRLVIPKKYAVKYfphvsastlenleRADDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAF 260
                     99*************************999999998887334448899*********************************************** PP

                     EE-SS.S CS
              B3  83 kldgr.s 88 
                     +l +  +
  XP_022973935.1 261 YLCEAaK 267
                     *875434 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MKQKWPSTIS ETRVNAIAEG SDSSCITCPF PANGCSKQGR SLTSKFKGVV PQQNGHWGAQ  60
IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKVTIEEPN FQTLYTTEAL  120
LNMLKDGSYT TKFAEYLRDR SESAQTSAGL SAANINNNEG TIKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPHVSASTL ENLERADDDR DVQLIFFDKT MRQWKFRYCY WKSSQSYVFT  240
RGWNRFVKEK QLKANDTIAF YLCEAAKTND AKTTFCVVDV KNRNGASSVE NEAKELLSPK  300
NKDGLKGDAE VEGFKLFGVH IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein