PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022974368.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

RAV

Protein Properties

Length: 349aa MW: 38848.2 Da PI: 9.8682

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022974368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.4	1.1e-10	70	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f + Aa a++ a+++++g XP_022974368.1 70 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEHHAANAYDIAALRFRG 118 689*9788.8*****3.....5******99***********98 PP
2	B3	97.2	1.1e-30	193	284	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ tpsdv+k++rlv+pk++ae++ g+ + +++ l led g++W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++ XP_022974368.1 193 FEKTVTPSDVGKLNRLVIPKQHAEKNfptgeGLGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTG 284 99***************************777889************************************************96543 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MYVYIPPPSA PHFPLIPFFF LSPNKMDASS IDESSGSDST SISPITPLLF HSSPAPGMPH 60 EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN QEHHAANAYD IAALRFRGRD 120 AVTNFKSLDD DDDNDAMEGE FLNSHSKLEI VDMLRKHTYN EELQQSKRQR GAIAAANTPV 180 HHSGVDSKRE VLFEKTVTPS DVGKLNRLVI PKQHAEKNFP TGEGLGSGKG MLLNLEDMGG 240 KVWRFRYSYW NSSQSYVLTK GWSRFVKEKS LRAGDVVRFL RSTGADKQLY IDGKAISEGG 300 VKAVHVVKLF GVNILEVPLP VGRCGGEPKN QGVLLELQPS KKQRIIKAL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MYVYIPPPSA PHFPLIPFFF LSPNKMDASS IDESSGSDST SISPITPLLF HSSPAPGMPH  60
EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN QEHHAANAYD IAALRFRGRD  120
AVTNFKSLDD DDDNDAMEGE FLNSHSKLEI VDMLRKHTYN EELQQSKRQR GAIAAANTPV  180
HHSGVDSKRE VLFEKTVTPS DVGKLNRLVI PKQHAEKNFP TGEGLGSGKG MLLNLEDMGG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKS LRAGDVVRFL RSTGADKQLY IDGKAISEGG  300
VKAVHVVKLF GVNILEVPLP VGRCGGEPKN QGVLLELQPS KKQRIIKAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-123	RAV family protein