PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022977110.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 197aa MW: 21481.5 Da PI: 8.7221

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022977110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.6	2.3e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q++++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++ql XP_022977110.1 2 SCSGCRVLRKGCNEACVLRSSLhwihsPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLFSSGNWHVCQL 96 6********************************************************************************************** PP DUF260 91 kaelal 96 +a+++l XP_022977110.1 97 AADTVL 102 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MSCSGCRVLR KGCNEACVLR SSLHWIHSPE AQANATLFLA KFFGRSDLLS FIAAVPHHQR 60 PALFQSLLFE ACGRTVNPVS GAVGLFSSGN WHVCQLAADT VLSGGVLRPI PGIELSGNPT 120 RNLDDSSLTF NTDVWTTTAQ NLQLYPSSPS DFRCLPDLAV AARTAKNRRS LDSEDSIMTS 180 FGSGDRRKQR KLLNLFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	192	DRRKQRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-57	LBD family protein