PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022978055.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 717aa MW: 80134.9 Da PI: 5.6431

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022978055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	120	142	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_022978055.1 120 VPCIFFQK-GLCLKGDRCAFLHGP 142 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MLGGGPQVLE QQQQSLPQPL SAADEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLIG TPHSTNSSSQ IPSQTSAIPS TPVNSSKQGV 120 PCIFFQKGLC LKGDRCAFLH GPSPVPMNKV PQATANAQTG KPPSVKKISG GTLRSGQEQK 180 IPRADFSKSI DGAPLKLATK DEAVPSNVGN VNEKSGPPAE VADDGSRYKT TNSLPVLNES 240 SLSRASRLQP SHVIDDYGLQ NGKDADEFLR ETSPGFDVLV DDELRGSGYY ESEEQYGRTR 300 GHEGTNMISM NDYEIGHSSD YKMISDVDHD VYNNVIDYDY DSRQGKYGWD RHRSSSEKLS 360 MGSAQMDKRL LPKSNSPEHI QTMDLRHRLN KQRRGNGLRS VINNEHTAGH PEERNYHAPR 420 RDSHPSQENS TSNRLRGRIK LPRIPSPVRN SNLQPERDLN RGRPWGRLLP GRSQSLSHEG 480 SNRDEMKGRL EEDYNNEGRN FIGLSSRRDR MDGTSDFAAP KSLAALKDKH VGSKEQRTLG 540 KRKGSDNEQS GGELSFEGPK SLGEILKKKR QVKSDVDPPA NNDERERCVR SIERSTTPLL 600 KQSGLSSTAK QESNSLEGTK SSPAEAFGLE EENIDVTHHP SSQPMHSTDD HEIEAYDETL 660 EEDHEYEGDD QRDCEYKYEQ VEYGEYNYEE GENINPEEEY MDDEDGDDFA KKIGVMS

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MLGGGPQVLE QQQQSLPQPL SAADEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLIG TPHSTNSSSQ IPSQTSAIPS TPVNSSKQGV  120
PCIFFQKGLC LKGDRCAFLH GPSPVPMNKV PQATANAQTG KPPSVKKISG GTLRSGQEQK  180
IPRADFSKSI DGAPLKLATK DEAVPSNVGN VNEKSGPPAE VADDGSRYKT TNSLPVLNES  240
SLSRASRLQP SHVIDDYGLQ NGKDADEFLR ETSPGFDVLV DDELRGSGYY ESEEQYGRTR  300
GHEGTNMISM NDYEIGHSSD YKMISDVDHD VYNNVIDYDY DSRQGKYGWD RHRSSSEKLS  360
MGSAQMDKRL LPKSNSPEHI QTMDLRHRLN KQRRGNGLRS VINNEHTAGH PEERNYHAPR  420
RDSHPSQENS TSNRLRGRIK LPRIPSPVRN SNLQPERDLN RGRPWGRLLP GRSQSLSHEG  480
SNRDEMKGRL EEDYNNEGRN FIGLSSRRDR MDGTSDFAAP KSLAALKDKH VGSKEQRTLG  540
KRKGSDNEQS GGELSFEGPK SLGEILKKKR QVKSDVDPPA NNDERERCVR SIERSTTPLL  600
KQSGLSSTAK QESNSLEGTK SSPAEAFGLE EENIDVTHHP SSQPMHSTDD HEIEAYDETL  660
EEDHEYEGDD QRDCEYKYEQ VEYGEYNYEE GENINPEEEY MDDEDGDDFA KKIGVMS