PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022978555.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25665 Da    PI: 9.4318
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022978555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1961114457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F +++++ +e++ +LA++lgL+ +qV +WFqNrRa++k+
  XP_022978555.1  61 KRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKN 114
                     56899***********************************************95 PP
2HD-ZIP_I/II112.62.5e-3660151293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqvklLE++F +e+kLe+erK++la+eLgl+p qva+WFqnrRAR+k+++lE++y+ Lk+a+d+ + ++++L+++ e+L+++l+e
  XP_022978555.1  60 KKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSILKKAHDSAVLQKTHLQSQIEKLKQQLAE 151
                     9***************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MAAVNLRPDD DNSTLISHFY NPEIYTQMLP QQGTAEGNKP TKRRRRRSRV KEVASTAGLK  60
KRKLSSEQVK LLEMNFGNEH KLETERKNRL ASELGLDPSQ VAIWFQNRRA RWKNQKLEHQ  120
YSILKKAHDS AVLQKTHLQS QIEKLKQQLA EAKNEIQKLV EVREINRRSS VTMDDVQAAA  180
CWGEILMEEY EDVFCSMQEN NYNQPVEWYL NYNYMYTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247KRRRRR
24263KRRRRRSRVKEVASTAGLKKRK
34364KRRRRRSRVKEVASTAGLKKRK
44465KRRRRRSRVKEVASTAGLKKRK
54566KRRRRRSRVKEVASTAGLKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-50HD-ZIP family protein