PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022982809.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 344aa    MW: 38549.1 Da    PI: 7.9209
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022982809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.8e-1455103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  XP_022982809.1  55 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAQRFRG 103
                     689***9788.8*********3.....5*************************98 PP
2B394.85.8e-30183284196
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsdv+k++rlv+pk++ae++      +  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F  +  ++
  XP_022982809.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSPGQD 277
                     89*************************9998733334677899999999***************************************9543366 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     ++l++ +
  XP_022982809.1 278 KQLYIEW 284
                     6666666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MDGICIDQTT STNSPPLKSP PPETSLCRVG SGFTSVVLDS DSCGVEAESR KLPSSRFKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA ARAYDVAAQR FRGRDAVTNF KEEEEEEDDD  120
DDDDDVSAFL NSHSKAEIVD MLRKHTYLHE LHQSKRNAGL SGLDRKHNRS LSGSDSDARE  180
LLFEKAVTPS DVGKLNRLVI PKQHAEKNFP LQTGSTASSK GLLLNFEDGG GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK NLKAGDIVSF LKSPGQDKQL YIEWKSRKAS PTTDSNMNPV  300
HIVRLFGVDI VKASSPNTGC GEKRRELEFL AFQCTKKQRI VGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-138RAV family protein