PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022983076.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 216aa    MW: 24926.4 Da    PI: 12.185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022983076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-165398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+ +G+ +W++Ia+ +  gR++k+c++rw++ 
   XP_022983076.1 53 RGHWRPAEDAKLKELVAHYGPQNWNLIAENLR-GRSGKSCRLRWFNQ 98
                     899*****************************.***********996 PP
2Myb_DNA-binding55.31.5e-17105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++ +eE+e+lv a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_022983076.1 105 RTAFNEEEEERLVTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 148
                      67899*****************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MNLPPFNHAF PGNGLLQNPA LMPPLPPPLP SSDGTAIVTK NNAPRRHTKL CARGHWRPAE  60
DAKLKELVAH YGPQNWNLIA ENLRGRSGKS CRLRWFNQLD PRINRTAFNE EEEERLVTAH  120
RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKQRRSLRK IFQKNNVSGE STISSTVSTS  180
AASTAWGRYG EKQRRRWRRS SQGTLSRTRM FRRRSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193199QRRRWRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-65MYB family protein