PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987356.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 241aa MW: 26356.6 Da PI: 8.6203

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.6	2e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q XP_022987356.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l XP_022987356.1 99 AVEAVLN 105 9998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PQSQANATFF LAKFYGRAGL LNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLNGVPIP PVSCEMATSH 120 MGPPLKGCDI RHVSKKQGSG LSEIKKRRRF KRKPKPKEEP VMLPEFVVDG PARISSEPRC 180 FKFELDNLEG HVSPEKVCGS EHTECLSVET AEASSVGQGG GVELELTLGF GHGRMLTCKE 240 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	152	KKRRRFKR
2	147	153	RRRFKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-78	LBD family protein