PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022987887.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 178aa    MW: 19988.5 Da    PI: 7.2168
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022987887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY200.38.2e-6271655168
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q+l+ ++  +        +    ++ +++    +++s s++ +++
  XP_022987887.1   7 IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDV-QVP----NYNLYSCNGPDFQGDFGSSSS-SSKCNNN 95 
                     579**************************************************99995.332....233333444444443333333.3333333 PP

           YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                     k++   +  ++   + v+rPPek+qrvPsayn+fikeeiqrika+nP+ishreafs+aaknWah+P+i f
  XP_022987887.1  96 KMEIRANTTMAAEERvVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPF 165
                     44444444444333339**************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MASCLDIAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQALS  60
WQDVQVPNYN LYSCNGPDFQ GDFGSSSSSS KCNNNKMEIR ANTTMAAEER VVNRPPEKKQ  120
RVPSAYNQFI KEEIQRIKAN NPEISHREAF STAAKNWAHY PRIPFWSDVG NQQSNEAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-73YABBY family protein