PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022987959.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 999aa MW: 113089 Da PI: 6.5274

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022987959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	436	480	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + WT++Ed++l av+ +G g+W ++a+t+ gRt+ qc +rw k XP_022987959.1 436 KSEWTKDEDDKLRSAVAIFGEGDWQAVASTLE-GRTGPQCSNRWKK 480 578***************************.*********98 PP
2	Myb_DNA-binding	34.9	3.6e-11	489	534	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++Ed +l+ av ++G+++W++ a+ ++ gR qc++rw++ XP_022987959.1 489 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 534 799***************************.*********996 PP
3	Myb_DNA-binding	39.5	1.3e-12	541	580	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 r WT+eEd++l a++++G W+++a++++ Rt+++c+ XP_022987959.1 541 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRR 580 568***************99.*****.*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYVNP QLSLPAAGDA 60 NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE 120 SDILSNKPDQ SCDLDGPLKM DSDNTNVERL TSSERSSMVA FEKGSLPKAA LAFIDAIKKN 180 RSQQKFLRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALSQMV DPRVQLISAG 240 KPQQAKDSSK KDKRLSAMCY GPAENSHVAC YRIALTKFHP VDRKRWSNFE RENLGKGIRQ 300 QFQEMVLQIS VDQISEIQGF SAESDDLDNI LASIKDLDIT PEKIREFLPK VNWDKLASMY 360 LRGRSGAECE ARWLNFEDPL INRNPWTTSE DKNLLFTIQQ KGLNNWIDLA VSLGTNRTPF 420 QWLSRYQRSL NASILKSEWT KDEDDKLRSA VAIFGEGDWQ AVASTLEGRT GPQCSNRWKK 480 SLDPARTKRG YFTPDEDSRL KIAVLLFGPK NWNKKAEFLP GRNQVQCRER WFNCLDPSLR 540 RCEWTEEEDL RLEIAIQEHG YSWAKVAACV PSRTDNECRR WKKLFPNQVP LLQEARKIQK 600 VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRTRRM PVSRNEKSAN 660 GDAPKKRKSN NQRNRVDETA QVDFASNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG 720 CNSERCAEQN SDTRNLEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF 780 SEQEENQNST GSSGVSVLSE MTNDMDEYNP STLPDTTLLA SITADDIIET KGVNVADKDL 840 DGSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHVVCK PQGRRKKNSK RSNKSQDSLV 900 SCQQAELEMS GTNELHRCNQ LKKRKHSSTN TSPLGTMEAV EEVDDCTLLG FLQKRLKRTT 960 TTHGKKVDGS SSTSPEVDND DNDPTLALLL KEKLKRKKH

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MSRRSHVDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYVNP QLSLPAAGDA  60
NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFETLR SIQRRFAAYE  120
SDILSNKPDQ SCDLDGPLKM DSDNTNVERL TSSERSSMVA FEKGSLPKAA LAFIDAIKKN  180
RSQQKFLRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALSQMV DPRVQLISAG  240
KPQQAKDSSK KDKRLSAMCY GPAENSHVAC YRIALTKFHP VDRKRWSNFE RENLGKGIRQ  300
QFQEMVLQIS VDQISEIQGF SAESDDLDNI LASIKDLDIT PEKIREFLPK VNWDKLASMY  360
LRGRSGAECE ARWLNFEDPL INRNPWTTSE DKNLLFTIQQ KGLNNWIDLA VSLGTNRTPF  420
QWLSRYQRSL NASILKSEWT KDEDDKLRSA VAIFGEGDWQ AVASTLEGRT GPQCSNRWKK  480
SLDPARTKRG YFTPDEDSRL KIAVLLFGPK NWNKKAEFLP GRNQVQCRER WFNCLDPSLR  540
RCEWTEEEDL RLEIAIQEHG YSWAKVAACV PSRTDNECRR WKKLFPNQVP LLQEARKIQK  600
VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRTRRM PVSRNEKSAN  660
GDAPKKRKSN NQRNRVDETA QVDFASNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG  720
CNSERCAEQN SDTRNLEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF  780
SEQEENQNST GSSGVSVLSE MTNDMDEYNP STLPDTTLLA SITADDIIET KGVNVADKDL  840
DGSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHVVCK PQGRRKKNSK RSNKSQDSLV  900
SCQQAELEMS GTNELHRCNQ LKKRKHSSTN TSPLGTMEAV EEVDDCTLLG FLQKRLKRTT  960
TTHGKKVDGS SSTSPEVDND DNDPTLALLL KEKLKRKKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	884	925	RRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein