PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022994155.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 451aa MW: 49900.5 Da PI: 5.2295

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022994155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8e-12	122	144	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_022994155.1 122 EDCAFYLRTGTCKFGSLCKFNHP 144 78********************9 PP
2	zf-CCCH	28.6	2.5e-09	170	190	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+++H XP_022994155.1 170 ECKYYSRTGGCKFGTACRYNH 190 8******************** PP
3	zf-CCCH	34.1	4.6e-11	215	237	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_022994155.1 215 KECPYYMRTGCCKYGANCKFNHP 237 68********************9 PP
4	zf-CCCH	19.3	2e-06	339	365	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_022994155.1 339 PGQPECSYFLKTGDCKFKSLCIYHHPK 365 5789*********************96 PP
5	zf-CCCH	35.7	1.4e-11	387	410	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G++CkF H+ XP_022994155.1 387 QNVCTYYSRYGICKFGPSCKFDHP 410 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MEPSEAVSVP IHCESLPSGS QSLQFHGSVH DPALFDASHV AADDRIHAEL QKLDLKDEKE 60 AAVKDSDGGG EWEVEKNPVE GEGNLEEEEE EVVVDAGDGG EVEKEGEMRG GNNHYPVRSE 120 AEDCAFYLRT GTCKFGSLCK FNHPLRKRHQ VVSEKLKNEN DSAEQTSKTE CKYYSRTGGC 180 KFGTACRYNH TRPRALPNPI LELNFLGLPI RLNEKECPYY MRTGCCKYGA NCKFNHPDPT 240 TVAVPESLSG YNNGVLLQGG ASQSQITSWT SPRVLNETPT FVPAMISPSQ DSKWNAYQAP 300 MYPSEISMLP PLTYAVNNIA SETDLYTSHQ QVEEYPERPG QPECSYFLKT GDCKFKSLCI 360 YHHPKNWNLK LPTCTLNDKG LPLRPDQNVC TYYSRYGICK FGPSCKFDHP ILPASSTSEL 420 KQQPHYSNFN AAEGAEMGGG SGNGVTVEQS A

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MEPSEAVSVP IHCESLPSGS QSLQFHGSVH DPALFDASHV AADDRIHAEL QKLDLKDEKE  60
AAVKDSDGGG EWEVEKNPVE GEGNLEEEEE EVVVDAGDGG EVEKEGEMRG GNNHYPVRSE  120
AEDCAFYLRT GTCKFGSLCK FNHPLRKRHQ VVSEKLKNEN DSAEQTSKTE CKYYSRTGGC  180
KFGTACRYNH TRPRALPNPI LELNFLGLPI RLNEKECPYY MRTGCCKYGA NCKFNHPDPT  240
TVAVPESLSG YNNGVLLQGG ASQSQITSWT SPRVLNETPT FVPAMISPSQ DSKWNAYQAP  300
MYPSEISMLP PLTYAVNNIA SETDLYTSHQ QVEEYPERPG QPECSYFLKT GDCKFKSLCI  360
YHHPKNWNLK LPTCTLNDKG LPLRPDQNVC TYYSRYGICK FGPSCKFDHP ILPASSTSEL  420
KQQPHYSNFN AAEGAEMGGG SGNGVTVEQS A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-122	C3H family protein