PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022994475.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22450.8 Da    PI: 10.5491
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022994475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.4e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqv+fskRrng+lKKA+EL vLCdaevav+ifs++gk y +ss
  XP_022994475.1  9 KRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSS 59
                    79***********************************************96 PP
2K-box68.22.6e-23861691598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       ++ e++ +++ i++L+  +Rh+ GedLe+L++keL++Le+qL  +++++Rsk  +++ e++++l+kk k lqee+ +L+k+l
  XP_022994475.1  86 LVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRL 169
                     5699*****************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRGKVEVKR IENPTSRQVS FSKRRNGVLK KAYELAVLCD AEVAVVIFSP SGKAYQFSSH  60
DIDGTLARYR KYVGQSQFNH PLSRALVWKS EMEDMNRSIS SLEARLRHFS GEDLEPLTIK  120
ELKRLERQLS VGIERVRSKM RRIISEHTSQ LKKKYKGLQE EHSRLQKRLN QLKDVAETTT  180
RISDADGVSV LEMFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-44MIKC_MADS family protein