PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022995343.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 779aa MW: 86364.1 Da PI: 6.7732

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022995343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	169	270	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022995343.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFL--RGE 259 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022995343.1 260 NGELRLGIRRA 270 9999**996 PP
2	Auxin_resp	120.9	9.3e-40	295	376	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fv++++k++k+++++v+vG+Rfkm+fe++ds+err+ G+v g+ d+dp+rWpnSkWr+L XP_022995343.1 295 VVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCL 376 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MEIDLNLTAS DVGKNAYCNG NCEEGHCNCC LSSSTSSCSS NSSPALVSSS TYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFGL QPQILCRVIN VHLLANKEND 120 EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST 180 HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL 240 FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAD DLARVVKAIS 300 TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI 360 GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIEPSVS LPPLSVQFSP RLKKLRTSLQ 420 AAPPNAFAVG RGGFMDFEDS IRSSKVLQGQ ENVGIVSPFY GRDTTKRSLE FEVRSSAHQA 480 SGGAEKYRGD YVKVHPNSSF TGFMESERFL KVLQGQEICS LRPQTRKPEH CLGVWGKFNL 540 SDNSFNTFHS PNSSFYHMAS NGAQNMYFPR SEFYSTGQAA AVMRSNDGNF PRESALFSPS 600 VDASVMSTTS GSNIRNSKDE SVNENSTGCR LFGFSLTTET AANMQSSGKR SCTKVHKQGS 660 LVGRAIDLSR LNGYTDLLSE LERLFCMEGL LKDPEKGWRV LYTDNENDVM VVGDYPWLDF 720 CDAVSKIHIY TQEEVEKMTN GVISDDTQSC LDQAPLCMEA SKSSSVGQPD SSPTVVREF

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MEIDLNLTAS DVGKNAYCNG NCEEGHCNCC LSSSTSSCSS NSSPALVSSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFGL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL  240
FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAD DLARVVKAIS  300
TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI  360
GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIEPSVS LPPLSVQFSP RLKKLRTSLQ  420
AAPPNAFAVG RGGFMDFEDS IRSSKVLQGQ ENVGIVSPFY GRDTTKRSLE FEVRSSAHQA  480
SGGAEKYRGD YVKVHPNSSF TGFMESERFL KVLQGQEICS LRPQTRKPEH CLGVWGKFNL  540
SDNSFNTFHS PNSSFYHMAS NGAQNMYFPR SEFYSTGQAA AVMRSNDGNF PRESALFSPS  600
VDASVMSTTS GSNIRNSKDE SVNENSTGCR LFGFSLTTET AANMQSSGKR SCTKVHKQGS  660
LVGRAIDLSR LNGYTDLLSE LERLFCMEGL LKDPEKGWRV LYTDNENDVM VVGDYPWLDF  720
CDAVSKIHIY TQEEVEKMTN GVISDDTQSC LDQAPLCMEA SKSSSVGQPD SSPTVVREF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein