PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022996096.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 503aa MW: 56779.9 Da PI: 7.5128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022996096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_022996096.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.4	1.3e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_022996096.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN 120 SIAPATMTMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLSCPLFT 180 FNTSSQELFH DTLSLNPDTT TTWHLNHPYH HHHHHQFLSE VLNPQIELGA TTSVMNNTNS 240 YLPPLIENIE SLVGMDDEGE MALECLQRQD VNDWVVESSQ PQNSNFLFWE NVEGSLGGEE 300 VIAPTSNSTL PLLPPAAVTD HFVKMIIPEK NRREISKYLF QEGVCYAKKD FNLAKHPEID 360 VPNLQVIKLM QSFKSKEYVR ETFAWMHYYW YLTNDGIEFL RTYLNLPSEI VPATLKKQAK 420 PAGRPFGGPS GDRPRPSRFD GERRFGGDRD GYRGGPRGSG GDFGDKGGAP ADYRPSFGGP 480 GGRPGFGRGA GGYGGAPAPS NLE

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN  120
SIAPATMTMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLSCPLFT  180
FNTSSQELFH DTLSLNPDTT TTWHLNHPYH HHHHHQFLSE VLNPQIELGA TTSVMNNTNS  240
YLPPLIENIE SLVGMDDEGE MALECLQRQD VNDWVVESSQ PQNSNFLFWE NVEGSLGGEE  300
VIAPTSNSTL PLLPPAAVTD HFVKMIIPEK NRREISKYLF QEGVCYAKKD FNLAKHPEID  360
VPNLQVIKLM QSFKSKEYVR ETFAWMHYYW YLTNDGIEFL RTYLNLPSEI VPATLKKQAK  420
PAGRPFGGPS GDRPRPSRFD GERRFGGDRD GYRGGPRGSG GDFGDKGGAP ADYRPSFGGP  480
GGRPGFGRGA GGYGGAPAPS NLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-89	MYB family protein