PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022997005.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 648aa MW: 69535.6 Da PI: 8.0968

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022997005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2.1e-24	239	283	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_022997005.1 239 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 283 79****************************************986 PP
2	QLQ	62.4	1.2e-21	170	205	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k XP_022997005.1 170 PFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRK 205 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MDFGVVGLDG VVVGSSHDTS GFSSLASSDP ETKQKWYESG VGFLQKQERS GSGAAAEDED 60 LRTSKLPKTY DDLSSSSSST KGLLFPHRQV ASLLRSNSPF FLSDSNQHPH QMLCFSSPKT 120 DPLPPDKTSS LSRVSPNFYH SSAPRNAGCN YGGLNGGSMN GSGFIGVRAP FTPSQWMELE 180 HQALIYKYIT ANVPVPSNLL IPIRKALEST GFSAYSAGFL RPGAVGWGSF NMGFSNNSDP 240 EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQAGHSHS VARASNITTA 300 ANATKLISSS ASAAAVPSNA SSNTLSFADQ HFKNIQCAES HPPPSSTTAQ INRMLITNKE 360 NGSIALHDTP TTSGFSVLSP SIEMKQQPKQ LPFAVQKQQN PFEESARAEF GLVSSNFLLN 420 QSQKASSLMN YRGYNPSEGI SSTQEAAETQ HSVRQFFNNW PKNQSDSSSV SWSNSNLDLQ 480 SDRTQLSISI PMATSDFRSS TSSPANEKVT LSPLKSLQEM DPLQMGLGVG NVMDEPNSRQ 540 TNWIPISWES SMGGPLGEVL QSTNNIGGEL KSSSILNLMT EGWDNSPSLG SSPTGVLQKT 600 AFGSFSNSST GSSPRTENNK THEGGGGGGG SSQCSDRFVN SSSSLPSV

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MDFGVVGLDG VVVGSSHDTS GFSSLASSDP ETKQKWYESG VGFLQKQERS GSGAAAEDED  60
LRTSKLPKTY DDLSSSSSST KGLLFPHRQV ASLLRSNSPF FLSDSNQHPH QMLCFSSPKT  120
DPLPPDKTSS LSRVSPNFYH SSAPRNAGCN YGGLNGGSMN GSGFIGVRAP FTPSQWMELE  180
HQALIYKYIT ANVPVPSNLL IPIRKALEST GFSAYSAGFL RPGAVGWGSF NMGFSNNSDP  240
EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VESQAGHSHS VARASNITTA  300
ANATKLISSS ASAAAVPSNA SSNTLSFADQ HFKNIQCAES HPPPSSTTAQ INRMLITNKE  360
NGSIALHDTP TTSGFSVLSP SIEMKQQPKQ LPFAVQKQQN PFEESARAEF GLVSSNFLLN  420
QSQKASSLMN YRGYNPSEGI SSTQEAAETQ HSVRQFFNNW PKNQSDSSSV SWSNSNLDLQ  480
SDRTQLSISI PMATSDFRSS TSSPANEKVT LSPLKSLQEM DPLQMGLGVG NVMDEPNSRQ  540
TNWIPISWES SMGGPLGEVL QSTNNIGGEL KSSSILNLMT EGWDNSPSLG SSPTGVLQKT  600
AFGSFSNSST GSSPRTENNK THEGGGGGGG SSQCSDRFVN SSSSLPSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-87	GRF family protein