PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022998494.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25606.6 Da    PI: 7.4767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022998494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.7e-1582136356
                     --SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++ +eq   Le++F+ +++++ + +++e A++l+L  rqV vWFqNrRa+ k
  XP_022998494.1  82 KKLRLFREQSAFLEDCFKDHHTLDPQkQKAEVARRLNLRPRQVEVWFQNRRARTK 136
                     55666789***************9752789***********************98 PP
2HD-ZIP_I/II114.27.8e-3781172192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl +eq+++LE++F+ +++L+p ++K+e+ar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L+ke ++Lr +lk
  XP_022998494.1  81 RKKLRLFREQSAFLEDCFKDHHTLDPqKQKAEVARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQENRKLRKELQDLR-ALK 172
                     69***********************94589**********************************************************9.555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MELGLRLGDQ QQTHNHNPKL LHLALLPPTP TPDGGGGDGE SPLVCSSLEL GLYEVEDHHQ  60
GNSDRGCSRG SDEDDQILGS RKKLRLFREQ SAFLEDCFKD HHTLDPQKQK AEVARRLNLR  120
PRQVEVWFQN RRARTKLKQT EVDCEYLKNC CQTLTQENRK LRKELQDLRA LKTTDSLFMH  180
SPATTLTMCA SCERAALIQP VNSKASGFSF TSNGSSSFSP TDPSTNNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086SRKKLRL
2131139RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-60HD-ZIP family protein