PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022998768.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 393aa MW: 43659.6 Da PI: 6.3629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022998768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	32	52	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksFs+ L H+r+H XP_022998768.1 32 CKLCNKSFSNGKVLGGHMRSH 52 *******************99 PP
2	zf-C2H2	13.5	0.00021	100	120	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F ++ L H+r H XP_022998768.1 100 CKICGKGFDSSKALFGHMRHH 120 99*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MISASDSGCV TQNPSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK 60 KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH 120 SGRRKESIQK SKEKECNNKD LGNLKSLRCQ SPIGAGQSDG ETLGLLRRKR SRRTRCKLSN 180 PYCCAASPCS SDLIEHSSSC VVDGIEPDVE ELALCLLMLS KGVDHYGGEF SSESMGGSHC 240 SGFKAKLPLK RATHLDLDLD LDSEEEEEER AKVGVFPEVG RYLKPLKKCE IEGFYVKVSE 300 EEVNGESGKE GKHQCGVCLK VFGSGKALGG HKRAHLLKPN LMNLEEEDDD EDDEDDDDED 360 EEDDDEFKPW WNGDGDDHHN GGRQLVEALA SSN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MISASDSGCV TQNPSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK  60
KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH  120
SGRRKESIQK SKEKECNNKD LGNLKSLRCQ SPIGAGQSDG ETLGLLRRKR SRRTRCKLSN  180
PYCCAASPCS SDLIEHSSSC VVDGIEPDVE ELALCLLMLS KGVDHYGGEF SSESMGGSHC  240
SGFKAKLPLK RATHLDLDLD LDSEEEEEER AKVGVFPEVG RYLKPLKKCE IEGFYVKVSE  300
EEVNGESGKE GKHQCGVCLK VFGSGKALGG HKRAHLLKPN LMNLEEEDDD EDDEDDDDED  360
EEDDDEFKPW WNGDGDDHHN GGRQLVEALA SSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	KKRKK
2	60	82	KKRKKNSITASYSLRENPKKSWK
3	61	83	KKRKKNSITASYSLRENPKKSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-13	C2H2 family protein