PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023001194.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28245.2 Da PI: 9.5324

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023001194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93	1.4e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+n qvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_023001194.1 9 KRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	109.5	3.7e-36	78	174	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++++++ + +++ e+akLk++ie Lq+++Rh++GedLesLslkeLq++eqqL+++lk++R++Kn+l++e+i++lqkk k+lq++n++L kk+ XP_023001194.1 78 RRLVANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRARKNQLMHESISDLQKKDKALQDQNNMLAKKI 172 556667888999**********************************************************************************9 PP K-box 99 ee 100 e XP_023001194.1 173 RE 174 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVQLKR IENKINMQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMEKILERY ERYSYAERRL VANDSQSNGN WTLEYAKLKA RIEVLQKNHR HFMGEDLESL 120 SLKELQNIEQ QLDSALKHVR ARKNQLMHES ISDLQKKDKA LQDQNNMLAK KIREKEKAQA 180 QNPQMEQQHS HAIEPSPLLL PQPFQSLNMP CPYPTHATGH EESAANHDRS GTLLPPWMLG 240 HHLGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-92	MIKC_MADS family protein