PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023001459.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28186.8 Da    PI: 9.8889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023001459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-313382150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_023001459.1 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 82
                    79***********************************************8 PP
2K-box1041.9e-341021975100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     s  s++ea+++ ++qe+akL++ei n+q+ +RhllGe+++sLs+k+L++L+ +Lek++++iRs+Kne+l+++ie++ k+e el ++n+ +r+k++
  XP_023001459.1 102 SAGSVSEANTQFYEQESAKLRAEIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKREIELYNTNQLIRAKIA 196
                     455699***************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_023001459.1 197 E 197
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGYPDEMQKQ KQKQAGEEQS QPRRSGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  60
VLCDAEVALI VFSTRGRLYE YANNSVRATI SRYKKACSDP YSAGSVSEAN TQFYEQESAK  120
LRAEIGNMQN LNRHLLGESI SSLSVKDLKS LQVKLEKGIS RIRSRKNEVL FAEIEYMHKR  180
EIELYNTNQL IRAKIAETER IQQNRSGNNS IGARGGGGEG EGCVGPNLEG NQQYYFPHQN  240
HHISLQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.13e-93MIKC_MADS family protein