PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023002574.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 208aa    MW: 23290.5 Da    PI: 9.2651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023002574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed  l+ +v+ +G+  tW + + + g++R++k+c++rw++yl
   XP_023002574.1 14 KGPWSPDEDATLKLYVETHGTAgTWIALPTKAGLKRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP
2Myb_DNA-binding53.94e-1769111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+ ++ +q+G++ W++Ia+ ++ gRt++++k++w++
   XP_023002574.1  69 GDFTEDEDNLIFNLYNQHGSR-WSSIASQLP-GRTDNDVKNHWNT 111
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPD EDATLKLYVE THGTAGTWIA LPTKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEDEDNLIF NLYNQHGSRW SSIASQLPGR TDNDVKNHWN TKLKKKKKLL  120
VAAGKTKLQT MSSTETSLPQ TISNSAGFDS VAQFQIPNVS PSSFSDMVPG GRGYGRDEWG  180
LMEDWGCYFS PDMVCTMFFK EKNGKLCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKKKKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-63MYB family protein