PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023002595.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 614aa MW: 65429.3 Da PI: 8.9855

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023002595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	217	261	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_023002595.1 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 261 79****************************************985 PP
2	QLQ	57.1	5.3e-20	148	183	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k XP_023002595.1 148 PFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRK 183 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGGG GVAEMEDLRA 60 SKLPKTSASS LLRSNSPFFV SDSNQNHHQM LCFSSPKAEP PPLDKTASLS AASPNFVRSS 120 APRNAGGSYG GLNGGSMHGG GFIGVRTPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP 180 IRKALESAGI PTFAGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD 240 QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITAAAT TTTASKLISS PPSMTAVPSN 300 ASPNTISCAG THHFKNLNRG GSHPPPSSAT APQINRMFIT NKENAGVGLH DSSSMNMKQF 360 KQLPFAIQKP NPFEESPRAE FTSVSSNFLL NPSQKTSSLM TYRAFNPSEG LTTSQPAAET 420 QHSLNWPKNQ SDSSSVSWSN WNPDLQSDRT QLSISIPMAT SDFRSSTSSP VHEKVTLSPL 480 RSSQEFDPIQ MGLGVGNVMD EANKQANWIP ISWESSMGGP LGEVLHSTNN NSGELKNSSI 540 LNLMTEGWDN SSSLGSSPTG VLQKTAFGSF SNSSTGSSPR TDNNNKTHEG GGGSQCSDRL 600 GSTFVNSSSS LPSG

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGGG GVAEMEDLRA  60
SKLPKTSASS LLRSNSPFFV SDSNQNHHQM LCFSSPKAEP PPLDKTASLS AASPNFVRSS  120
APRNAGGSYG GLNGGSMHGG GFIGVRTPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP  180
IRKALESAGI PTFAGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITAAAT TTTASKLISS PPSMTAVPSN  300
ASPNTISCAG THHFKNLNRG GSHPPPSSAT APQINRMFIT NKENAGVGLH DSSSMNMKQF  360
KQLPFAIQKP NPFEESPRAE FTSVSSNFLL NPSQKTSSLM TYRAFNPSEG LTTSQPAAET  420
QHSLNWPKNQ SDSSSVSWSN WNPDLQSDRT QLSISIPMAT SDFRSSTSSP VHEKVTLSPL  480
RSSQEFDPIQ MGLGVGNVMD EANKQANWIP ISWESSMGGP LGEVLHSTNN NSGELKNSSI  540
LNLMTEGWDN SSSLGSSPTG VLQKTAFGSF SNSSTGSSPR TDNNNKTHEG GGGSQCSDRL  600
GSTFVNSSSS LPSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-86	GRF family protein