PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023002939.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 210aa    MW: 24029.9 Da    PI: 9.7902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023002939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-151150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ t+ kR++g+lKK +EL +LC+++++ i+fs+
  XP_023002939.1 11 IVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSP 50
                    789************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MARKKVKLAY IVNDSARKAT YKKRKKGLLK KLSELTTLCG IQACAIVFSP YDSPPELWPS  60
ALGVQRVLSQ FKNMPEMEQS KKMVNQDTFL RQRIAKAEEQ LKKIRKENRE KEVTRLMFQI  120
LTGPEWLQGL SVVDLNDLSW VIDETLKGIS KRIDCFKRLL PPPPPQTASW VMEVASPQDG  180
MAFVGDDMGL SFEDHSYNTE NVIWSNAFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYIVNDSARKATYKKRK
21732RKATYKKRKKGLLKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-53M-type_MADS family protein