PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023004227.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 167aa MW: 19377.2 Da PI: 5.7263

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023004227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.8	2.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ nr+vtf+kRr g++KKA ELSvLCd+ev ++if ++g+lye++s XP_023004227.1 9 KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCS 59 79***********************************************96 PP
2	K-box	27.8	1e-10	90	151	17	78
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + + + + + + Lq+ q h+ d ++L+++++ +Le+qLe sl ki+s++ e ++e+ + XP_023004227.1 90 EESDETLMVSFGKLLQTIQSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSS 151 333334445555778999999999*********************************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MGRKKIELKR IEDMCNRHVT FCKRRSGLIK KARELSVLCD VEVGLVIFTN RGRLYEFCSG 60 DSLLNIIKRY QSHFEGRSES QNEVDTKENE ESDETLMVSF GKLLQTIQSH VEEPDFKKLN 120 VNDMVHLENQ LEASLDKIKS QRVEAMMENS SWIDKMDMAI AMVDSQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	5e-39	MIKC_MADS family protein