PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023005560.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 201aa    MW: 22196 Da    PI: 8.4069
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023005560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY214.43.6e-66191846168
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsv 96 
                     ss+++Cyv+Cn C+t+lavsvP +slfk+vtvrCGhC++ll vn++    ll++ +h  +++ ++ +     + +n+ +  ++ +     ++t+ 
  XP_023005560.1  19 SSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGG-MLLPSPNH-FHAFPPSSTPFFTPNAHNFLEEISNPNpnfaMNQTDG 111
                     79****************************************998875.67899999.4566666444444444444433333330000333444 PP

           YABBY  97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                        ++ +   ++vpr+p  ++rP ek+qrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ih+
  XP_023005560.1 112 IDLTMVTRVGNDVPRAPSnINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHN 184
                     444557888999***99889****************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MSSFSLPTTF SQHPPPPPSS DHLCYVHCNI CDTVLAVSVP CASLFKTVTV RCGHCANLLP  60
VNMRGGMLLP SPNHFHAFPP SSTPFFTPNA HNFLEEISNP NPNFAMNQTD GIDLTMVTRV  120
GNDVPRAPSN INRPAEKKQR VPSAYNRFIK EEIQRIKAAN PDISHREAFS AAAKNWAHFP  180
HIHNFGVPPP NNNNNNNNNT P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-56YABBY family protein