PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023005988.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 219aa    MW: 23086.2 Da    PI: 7.8279
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023005988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.84.8e-40131131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++ye++ar+rdPvyG+v++i++lqqq+++l+ael
  XP_023005988.1  13 PCGACKFLRRKCIPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVASLQAEL 107
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_023005988.1 108 SYLQAH 113
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSANPGTSGG GGPCGACKFL RRKCIPGCIF APYFDSEQGA GHFAAVHKVF GASNVSKLLL  60
HIPVHKRLDA VVTICYESQA RLRDPVYGCV AHIFALQQQV ASLQAELSYL QAHLATLELP  120
SPPPPPNFAA QPQVSISDLP SASSLPVTYD LSSLFDPMAQ PAWAMQQQRL DHRQFSSGVA  180
GGSSTTAGEG DLQALARALL HRHGGPPCSD ASSQPSLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-68LBD family protein