PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023007779.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GATA

Protein Properties

Length: 539aa MW: 59972.9 Da PI: 6.2852

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023007779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.8	9.8e-16	7	40	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg XP_023007779.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKG 40 **************55555********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYTPLHA RADPDECEDK 60 RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKTVDEDTS YRSSSGSAIS 120 NSESCQQFGS ADASDLTGPS QSTAWETVVP SRKRTCVGRS KSTAVEKLTQ DLYTILREQQ 180 SYFSGSSEED LLFDSETPMV SVEIGHGSVL MRHPSLIARE EESEASSISV DNKQFTLNEV 240 YSEPSILPVH YEADNKVVNF STLGIGRKHS NGQGFLQEQV KRDRPQSEKT QALGNHNSLL 300 CNIDLMDILN FREFTKQLTS EDQQELMKYL PSVDTEELPD SLNSMFESPE FKENLNSFKQ 360 LLTEGVFDLS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKTCSSGVA VQGFAAASSG 420 FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTIVESKELV DSDGSCFSPR SLFALPSDGG 480 SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLMHH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYTPLHA RADPDECEDK  60
RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKTVDEDTS YRSSSGSAIS  120
NSESCQQFGS ADASDLTGPS QSTAWETVVP SRKRTCVGRS KSTAVEKLTQ DLYTILREQQ  180
SYFSGSSEED LLFDSETPMV SVEIGHGSVL MRHPSLIARE EESEASSISV DNKQFTLNEV  240
YSEPSILPVH YEADNKVVNF STLGIGRKHS NGQGFLQEQV KRDRPQSEKT QALGNHNSLL  300
CNIDLMDILN FREFTKQLTS EDQQELMKYL PSVDTEELPD SLNSMFESPE FKENLNSFKQ  360
LLTEGVFDLS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKTCSSGVA VQGFAAASSG  420
FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTIVESKELV DSDGSCFSPR SLFALPSDGG  480
SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLMHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-145	GATA family protein