PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511538.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 304aa MW: 34446.6 Da PI: 7.5006

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d v++ G g+W+ ++ g++R++k+c++rw +yl XP_023511538.1 14 KGPWTPEEDKKLIDFVARNGHGSWRNLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ +++++ lG++ W++Ia++++ gRt++++k++w+++l XP_023511538.1 67 RGKFSEEEESAIIKLHSVLGNR-WSKIASHFP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MGRSPCCDEI GVKKGPWTPE EDKKLIDFVA RNGHGSWRNL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEESAIIK LHSVLGNRWS KIASHFPGRT DNEIKNFWNT HLRKKLLQMG 120 IDPNTHKPRT DLNHLLNNSQ LFNGIANYLN NDHLKLQAEL VKLQLLQNLC QLLNPTTPSQ 180 ALPSTPLDRL QNPNSNPSRA SFSTQNPNSS QLQAGFTSGF MSGSGFEYED KNKAKMEEME 240 NFDYVQVENY YPILPPLTSE SETNPLGCST NSNSPSSSSS IFDSLESLMN EDEPSESYWN 300 NLLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	8e-81	MYB family protein