PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511668.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 351aa MW: 38252.1 Da PI: 7.5182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023511668.1 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*******.***********8 PP
2	zf-CCCH	18.7	3.2e-06	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023511668.1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023511668.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS 60 GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD 180 SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGGG SGNGSNSKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDLKQGVLPK APGDTLVASV 300 PSLPHSDVYH IVVPSQRSTI VIQRSGQRTH QKWKGPDKIS RIYGDWIDDI E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS  60
GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGGG SGNGSNSKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDLKQGVLPK APGDTLVASV  300
PSLPHSDVYH IVVPSQRSTI VIQRSGQRTH QKWKGPDKIS RIYGDWIDDI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-130	C3H family protein